J Cancer 2022; 13(1):278-289. doi:10.7150/jca.65421 This issue Cite

Research Paper

Pan-cancer analysis identifies FAM49B as an immune-related prognostic maker for hepatocellular carcinoma

Feng Xu1*, Jionghuang Chen2*, Dihua Huang3✉

1. Department of General Surgery, Shaoxing People's Hospital (Shaoxing Hospital, Zhejiang University School of Medicine), Shaoxing, Zhejiang, China.
2. Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
3. Department of Endocrinology, Shaoxing People's Hospital (Shaoxing hospital, Zhejiang University School of Medicine), Shaoxing, Zhejiang, China.
*These authors contributed equally to this work.

Citation:
Xu F, Chen J, Huang D. Pan-cancer analysis identifies FAM49B as an immune-related prognostic maker for hepatocellular carcinoma. J Cancer 2022; 13(1):278-289. doi:10.7150/jca.65421. https://www.jcancer.org/v13p0278.htm
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Abstract

Graphic abstract

Family with sequence similarity 49, member B (FAM49B) is highly expressed in many tumors, its role in malignant tumors especially in hepatocellular carcinoma (HCC) remains uncertain. We first evaluated the expression, clinical features, and prognostic value of FAM49B using RNA-seq and clinical data from The Cancer Genome Atlas. We further assessed the role of FAM49B in the tumor immune microenvironment. The correlation of FAM49B with the sensitivity of 192 anti-cancer drugs was analyzed using data from Genomics of Drug Sensitivity in Cancer database. qRT-PCR assay was used to validate the expression of FAM49B in HCC. FAM49B was expressed at high levels in most tumor types, including HCC. High FAM49B expression predicted poor survival in patients with HCC. We also found that FAM49B expression was negatively associated with the infiltration levels of immune killer cells, including NK cells, and positively associated with immunosuppressive cells, including Tregs and Central Memory T cell (Tcm), in HCC. In addition, FAM49B expression was positively associated with immune checkpoints, immune regulation genes, MHC genes, chemokines and chemokine receptors. Patients with evaluated expression of FAM49B might be resistant to several anti-cancer drugs. Our results suggest that FAM49B is a potential prognostic biomarker for HCC. FAM49B play a potential key role in regulating tumor immune microenvironment and anti-tumor drug tolerance.

Keywords: FAM49B, TCGA, hepatocellular carcinoma, immune microenvironment, prognostic biomarker


Citation styles

APA
Xu, F., Chen, J., Huang, D. (2022). Pan-cancer analysis identifies FAM49B as an immune-related prognostic maker for hepatocellular carcinoma. Journal of Cancer, 13(1), 278-289. https://doi.org/10.7150/jca.65421.

ACS
Xu, F.; Chen, J.; Huang, D. Pan-cancer analysis identifies FAM49B as an immune-related prognostic maker for hepatocellular carcinoma. J. Cancer 2022, 13 (1), 278-289. DOI: 10.7150/jca.65421.

NLM
Xu F, Chen J, Huang D. Pan-cancer analysis identifies FAM49B as an immune-related prognostic maker for hepatocellular carcinoma. J Cancer 2022; 13(1):278-289. doi:10.7150/jca.65421. https://www.jcancer.org/v13p0278.htm

CSE
Xu F, Chen J, Huang D. 2022. Pan-cancer analysis identifies FAM49B as an immune-related prognostic maker for hepatocellular carcinoma. J Cancer. 13(1):278-289.

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